Info • Macrolepiota fuliginosa MF-IS2 v1.0

Status

Assembly v1 (March 2013) is a minimal draft assembly of Illumina unpaired-end gDNA reads which were assembled first using Velvet to simulate paired end reads. A total of 3478 scaffolds and 46.4 Mbp were then assembled using AllPathsLG.

Summary statistics for the Macrolepiota fuliginosa v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 46.40
Sequencing read coverage depth 165.4x
# of contigs 4852
# of scaffolds 3478
# of scaffolds >= 2Kbp 2184
Scaffold N50 199
Scaffold L50 (Mbp) 0.05
# of gaps 1374
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 0.63, 0.54, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 51170 47548 92.9%


Gene Models FilteredModels4
length (bp) of: average median
gene 1576 1306
transcript 1271 1044
exon 236 144
intron 72 57
description:
protein length (aa) 376 301
exons per gene 5.39 4
# of gene models 15801


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.