Info • Mariannaea sp. PMI_226 v1.0

Status

[November 2016] The Mariannaea sp. PMI_226 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mariannaea sp. PMI_226 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.25
Sequencing read coverage depth 160.69x
# of contigs 35
# of scaffolds 35
# of scaffolds >= 2Kbp 35
Scaffold N50 5
Scaffold L50 (Mbp) 2.94
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.53, 4.51, 4.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40422 35066 86.7%
Ests est.fasta 122994489 122738408 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1713 1472
transcript 1551 1326
exon 559 342
intron 94 67
description:
protein length (aa) 457 379
exons per gene 2.77 2
# of gene models 12638


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.