Status
The genome sequence and gene prediction of Marssonina brunnea f. sp. multigermtubi MB_m1 have not been determined by the JGI, but were downloaded from Genbank on Nov 25, 2014. Please note that this copy of the genome is not maintained by the authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Marssonina brunnea f. sp.
"multigermtubi" MB_m1 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 51.95 |
| Sequencing read coverage depth | 34x |
| # of contigs | 2415 |
| # of scaffolds | 89 |
| # of scaffolds >= 2Kbp | 64 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 1.60 |
| # of gaps | 2326 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 5.19, 3.19, 2.65 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1783 | 1445 |
| transcript | 1491 | 1200 |
| exon | 430 | 225 |
| intron | 120 | 68 |
| description: | ||
| protein length (aa) | 497 | 400 |
| exons per gene | 3.47 | 3 |
| # of gene models | 10027 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Zhu S, Cao YZ, Jiang C, Tan BY, Wang Z, Feng S, Zhang L, Su XH, Brejova B, Vinar T, Xu M, Wang MX, Zhang SG, Huang MR, Wu R, Zhou Y
Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution.
BMC Genomics. 2012 Aug 9;13():382. doi: 10.1186/1471-2164-13-382
Zhu S, Cao YZ, Jiang C, Tan BY, Wang Z, Feng S, Zhang L, Su XH, Brejova B, Vinar T, Xu M, Wang MX, Zhang SG, Huang MR, Wu R, Zhou Y
Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution.
BMC Genomics. 2012 Aug 9;13():382. doi: 10.1186/1471-2164-13-382
Funding
This project was not sequenced at the JGI.
