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Info • Massarina eburnea CBS 473.64 v1.0

Status

[Dec 2014] The Massarina eburnea genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Massarina eburnae CBS 473.64 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.24
Sequencing read coverage depth 56.8x
# of contigs 1105
# of scaffolds 233
# of scaffolds >= 2Kbp 178
Scaffold N50 10
Scaffold L50 (Mbp) 1.57
# of gaps 872
% of scaffold length in gaps 3.6%
Three largest Scaffolds (Mbp) 2.75, 2.21, 2.18


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 27860 27551 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1678 1448
transcript 1546 1325
exon 578 367
intron 81 57
description:
protein length (aa) 441 362
exons per gene 2.67 2
# of gene models 12935


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.