Info • Mattirolomyces terfezioides MAT_tt4AIII v1.0

Status

[June 2021] The Mattirolomyces terfezioides MAT_tt4AIII v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 50.06
Sequencing read coverage depth 21.05x
# of contigs 106
# of scaffolds 106
# of scaffolds >= 2Kbp 106
Scaffold N50 21
Scaffold L50 (Mbp) 0.87
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.73, 1.84, 1.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55509 52520 94.6%
Ests est.fasta 159381539 157114915 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1876 1612
transcript 1646 1389
exon 468 281
intron 93 67
description:
protein length (aa) 471 376
exons per gene 3.52 3
# of gene models 10894


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.