Status
[September 2018] The Melanogaster broomeianus MBLB.BST v1.0 genome was sequenced with PacBio, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline.
The mitochondrial genome was assembled separately and is available on the Download page.
Summary statistics for the Melanogaster broomeianus
MBLB.BST v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 49.61 |
| Sequencing read coverage depth | 74.6x |
| # of contigs | 1520 |
| # of scaffolds | 1176 |
| # of scaffolds >= 2Kbp | 914 |
| Scaffold N50 | 63 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 344 |
| % of scaffold length in gaps | 1.5% |
| Three largest Scaffolds (Mbp) | 1.39, 1.35, 0.83 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1647 | 1357 |
| transcript | 1238 | 999 |
| exon | 193 | 129 |
| intron | 78 | 58 |
| description: | ||
| protein length (aa) | 413 | 333 |
| exons per gene | 6.40 | 5 |
| # of gene models | 14167 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, Culley D, Crous PW, Fauchery L, Girlanda M, Hayes RD, Kéri Z, LaButti K, Lipzen A, Lombard V, Magnuson J, Maillard F, Murat C, Nolan M, Ohm RA, Pangilinan J, Pereira MF, Perotto S, Peter M, Pfister S, Riley R, Sitrit Y, Stielow JB, Szöllősi G, Žifčáková L, Štursová M, Spatafora JW, Tedersoo L, Vaario LM, Yamada A, Yan M, Wang P, Xu J, Bruns T, Baldrian P, Vilgalys R, Dunand C, Henrissat B, Grigoriev IV, Hibbett D, Nagy LG, Martin FM
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
Nat Commun. 2020 Oct 12;11(1):5125. doi: 10.1038/s41467-020-18795-w
Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, Culley D, Crous PW, Fauchery L, Girlanda M, Hayes RD, Kéri Z, LaButti K, Lipzen A, Lombard V, Magnuson J, Maillard F, Murat C, Nolan M, Ohm RA, Pangilinan J, Pereira MF, Perotto S, Peter M, Pfister S, Riley R, Sitrit Y, Stielow JB, Szöllősi G, Žifčáková L, Štursová M, Spatafora JW, Tedersoo L, Vaario LM, Yamada A, Yan M, Wang P, Xu J, Bruns T, Baldrian P, Vilgalys R, Dunand C, Henrissat B, Grigoriev IV, Hibbett D, Nagy LG, Martin FM
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
Nat Commun. 2020 Oct 12;11(1):5125. doi: 10.1038/s41467-020-18795-w
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Boletales
- Mycorrhizal fungi EcoGroup
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
