Info • Melanomma pulvis-pyrius v1.0

Status

[April 2013] The Melanomma pulvis-pyrius CBS 109.77 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Melanomma pulvis-pyrius v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.09
Sequencing read coverage depth 119.3x
# of contigs 1771
# of scaffolds 1754
# of scaffolds >= 2Kbp 1325
Scaffold N50 205
Scaffold L50 (Mbp) 0.06
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.28, 0.24, 0.21


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 24677 23849 96.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1630 1390
transcript 1487 1257
exon 538 343
intron 83 57
description:
protein length (aa) 435 357
exons per gene 2.77 2
# of gene models 15881


Collaborators

Joseph Spatafora, Oregon State University, USA.

Pedro Crous and Manfred Binder at CBS-KNAW, Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.