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Info • Metschnikowia gruessii VY0332 v1.0

Status

[September 2020] The Metschnikowia gruessii VY0332 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Metschnikowia gruessii VY0332 is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the smaller scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertoire of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Metschnikowia gruessii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.81
Sequencing read coverage depth 300.38x
# of contigs 80
# of scaffolds 80
# of scaffolds >= 2Kbp 80
Scaffold N50 8
Scaffold L50 (Mbp) 1.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.95, 4.04, 2.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 17763 15504 87.3%
Ests est.fasta 101973647 101385883 99.4%


Gene Models FilteredModels3
length (bp) of: average median
gene 1660 1406
transcript 1598 1364
exon 1163 955
intron 167 67
description:
protein length (aa) 461 377
exons per gene 1.37 1
# of gene models 7148


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.