Info • Ordospora pajunii v1.0

Status

[April 2023] The Ordospora pajunii genome was isolated from single spores, sequenced with Illumina, assembled with Spades, and annotated with the JGI Annotation Pipeline.

Genome Assembly
Genome Assembly size (Mbp) 2.24
Sequencing read coverage depth 1.0x
# of contigs 42
# of scaffolds 42
# of scaffolds >= 2Kbp 42
Scaffold N50 6
Scaffold L50 (Mbp) 0.13
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.26, 0.24, 0.19


Gene Models FilteredModels1
length (bp) of: average median
gene 1164 945
transcript 1160 939
exon 1123 903
intron 120 75
description:
protein length (aa) 387 313
exons per gene 1.03 1
# of gene models 1602


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Dziuba MK, McIntire KM, Seto K, Davenport ES, Rogalski MA, Gowler CD, Baird E, Vaandrager M, Huerta C, Jaye R, Corcoran FE, Withrow A, Ahrendt S, Salamov A, Nolan M, Tejomurthula S, Barry K, Grigoriev IV, James TY, Duffy MA
Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp.
mBio. 2024 Apr 23;():e0058224. doi: 10.1128/mbio.00582-24

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.