Status
[April 2023] The Ordospora pajunii genome was isolated from single spores, sequenced with Illumina, assembled with Spades, and annotated with the JGI Annotation Pipeline.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 2.24 |
| Sequencing read coverage depth | 1.0x |
| # of contigs | 42 |
| # of scaffolds | 42 |
| # of scaffolds >= 2Kbp | 42 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.26, 0.24, 0.19 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1164 | 945 |
| transcript | 1160 | 939 |
| exon | 1123 | 903 |
| intron | 120 | 75 |
| description: | ||
| protein length (aa) | 387 | 313 |
| exons per gene | 1.03 | 1 |
| # of gene models | 1602 |
Collaborators
- Meghan Duffy, University of Michigan, MI, USA
- Marcin Dziuba, University of Michigan, MI, USA
- Timothy James, University of Michigan, MI, USA
Links
- JGI PhyloGroup Portals: Fungi Microsporidia
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
