Info • Microsporum canis CBS 113480

Status

This genome was sequenced by the Broad Institute. Please check their data use policies.

The Arthroderma otae strain CBS 113480 genome is sequenced at 8X coverage using whole genome shotgun (WGS) sequencing. They assembled 16 chromosomal scaffolds and 1 mitochondrial scaffold.

Summary statistics for the Microsporum canis CBS 113480 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 23.24
Sequencing read coverage depth 7.78x
# of contigs 309
# of scaffolds 16
# of scaffolds >= 2Kbp 16
Scaffold N50 4
Scaffold L50 (Mbp) 2.92
# of gaps 293
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 3.83, 3.64, 3.03


Gene Models BroadModels
length (bp) of: average median
gene 1636 1370
transcript 1459 1206
exon 455 233
intron 82 67
description:
protein length (aa) 486 402
exons per gene 3.21 3
# of gene models 8915


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, Kosti I, Rossi A, Saif S, Samalova M, Saunders CW, Shea T, Summerbell RC, Xu J, Young S, Zeng Q, Birren BW, Cuomo CA, White TC
Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection.
mBio. 2012;3(5):e00259-12. doi: 10.1128/mBio.00259-12

Funding

This project was not sequenced at the JGI.