Status
This genome was sequenced at low coverage by the Joint Genome Institute (JGI), then assembled and annotated by Jason Stajich.
In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 42.94 |
| Sequencing read coverage depth | |
| # of contigs | 3288 |
| # of scaffolds | 3044 |
| # of scaffolds >= 2Kbp | 1951 |
| Scaffold N50 | 346 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 244 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.20, 0.20, 0.17 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2020 | 1686 |
| transcript | 1605 | 1293 |
| exon | 442 | 224 |
| intron | 160 | 116 |
| description: | ||
| protein length (aa) | 535 | 431 |
| exons per gene | 3.63 | 3 |
| # of gene models | 12079 |
Collaborators
- Gregory Bonito, Michigan State University, Michigan
- Jason Stajich, UC Riverside, California
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Vandepol N, Liber J, Desirò A, Na H, Kennedy M, Barry K, Grigoriev IV, Miller AN, O'Donnell K, Stajich JE, Bonito G
Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics.
Fungal Divers. 2020 Sep;104(1):267-289. doi: 10.1007/s13225-020-00455-5
Vandepol N, Liber J, Desirò A, Na H, Kennedy M, Barry K, Grigoriev IV, Miller AN, O'Donnell K, Stajich JE, Bonito G
Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics.
Fungal Divers. 2020 Sep;104(1):267-289. doi: 10.1007/s13225-020-00455-5
Links
- JGI PhyloGroup Portals: Fungi Mucoromycota Mortierellomycotina
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
