Info • Mortierella elongata NVP64 v1.0

Status

[May 2019] The Mortierella elongata NVP64 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section

Summary statistics for the Mortierella elongata NVP64 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.15
Sequencing read coverage depth 143.80x
# of contigs 33
# of scaffolds 33
# of scaffolds >= 2Kbp 33
Scaffold N50 8
Scaffold L50 (Mbp) 2.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.81, 4.28, 2.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 89039974 87371035 98.1%
Other Trinity_assembled_Illumina_transcriptome 40100 37969 94.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2147 1907
transcript 1687 1450
exon 463 265
intron 176 120
description:
protein length (aa) 486 403
exons per gene 3.64 3
# of gene models 13739


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mathieu D, Bryson AE, Hamberger B, Singan V, Keymanesh K, Wang M, Barry K, Mondo S, Pangilinan J, Koriabine M, Grigoriev IV, Bonito G, Hamberger B
Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long-standing interaction among land plants and fungi.
Plant J. 2024 Jan 24;():. doi: 10.1111/tpj.16605

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.