Status
[May 2019] The Mortierella elongata NVP64 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section
Summary statistics for the Mortierella elongata NVP64 v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 51.15 |
Sequencing read coverage depth | 143.80x |
# of contigs | 33 |
# of scaffolds | 33 |
# of scaffolds >= 2Kbp | 33 |
Scaffold N50 | 8 |
Scaffold L50 (Mbp) | 2.74 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 4.81, 4.28, 2.98 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Ests | est.fasta | 89039974 | 87371035 | 98.1% |
Other | Trinity_assembled_Illumina_transcriptome | 40100 | 37969 | 94.7% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 2147 | 1907 |
transcript | 1687 | 1450 |
exon | 463 | 265 |
intron | 176 | 120 |
description: | ||
protein length (aa) | 486 | 403 |
exons per gene | 3.64 | 3 |
# of gene models | 13739 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Mathieu D, Bryson AE, Hamberger B, Singan V, Keymanesh K, Wang M, Barry K, Mondo S, Pangilinan J, Koriabine M, Grigoriev IV, Bonito G, Hamberger B
Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long-standing interaction among land plants and fungi.
Plant J. 2024 Jan 24;():. doi: 10.1111/tpj.16605
Mathieu D, Bryson AE, Hamberger B, Singan V, Keymanesh K, Wang M, Barry K, Mondo S, Pangilinan J, Koriabine M, Grigoriev IV, Bonito G, Hamberger B
Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long-standing interaction among land plants and fungi.
Plant J. 2024 Jan 24;():. doi: 10.1111/tpj.16605
Links
- JGI PhyloGroup Portals: Fungi Mucoromycota Mortierellomycotina Mortierella
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.