Info • Monacrosporium haptotylum CBS 200.50

Status

This genome was sequenced by Meerupati T, Andersson K-M, Friman E et al. in Microbial Ecology Group, Department of Biology, Lund University, Ecology Building, Lund, Sweden, BILS Bioinformatics Infrastructure for Life Sciences, Department of Biology, Lund University, Ecology Building, Lund, Sweden (Genomic Mechanisms Accounting for the Adaptation to Parasitism in Nematode-Trapping Fungi). Please check their data use policies.

Summary statistics for the Monacrosporium haptotylum CBS 200.50 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.53
Sequencing read coverage depth 28x
# of contigs 1329
# of scaffolds 1279
# of scaffolds >= 2Kbp 579
Scaffold N50 58
Scaffold L50 (Mbp) 0.19
# of gaps 50
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.94, 0.82, 0.81


Gene Models ExternalModels
length (bp) of: average median
gene 1806 1442
transcript 1555 1251
exon 470 258
intron 111 71
description:
protein length (aa) 518 417
exons per gene 3.31 3
# of gene models 10959


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Meerupati T, Andersson KM, Friman E, Kumar D, Tunlid A, Ahrén D
Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi.
PLoS Genet. 2013 Nov;9(11):e1003909. doi: 10.1371/journal.pgen.1003909

Andersson KM, Meerupati T, Levander F, Friman E, Ahrén D, Tunlid A
Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum.
Appl Environ Microbiol. 2013 Aug;79(16):4993-5004. doi: 10.1128/AEM.01390-13

Meerupati Tejashwari, Andersson Karl-Magnus, Friman Eva, Kumar Dharmendra, Tunlid Anders, Ahrén Dag
Genomic Mechanisms Accounting for the Adaptation to Parasitism in Nematode-Trapping Fungi
PLoS Genet. 2013;9(11):e1003909. doi: 10.1371/journal.pgen.1003909

Funding

This project was not sequenced at the JGI.