Info • Moniliophthora perniciosa FA553


This genome was sequenced by Jorge MC Mondego, Marcelo F Carazzolle, Gustavo GL Costa et al. in Laboratório de Genômica e Expressão, Departamento de Genética e Evolução, Instituto de Biologia, Universidade Estadual de Campinas, CP 6109, 13083-970, Campinas - SP, Brazil (A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao). Please check their data use policies.

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The singlet ID from NCBI maps into simpler format we made in MycoCosm. Please check mapping_singlet.txt in download page so that bring back into original ID. For example, singlet ID "singlet_01" in MycoCosm maps into "CP01-S0-000-001-D09-UC.F" in NCBI.

Summary statistics for the Moniliophthora perniciosa FA553 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.41
Sequencing read coverage depth 1.9x
# of contigs 14868
# of scaffolds 14868
# of scaffolds >= 2Kbp 1990
Scaffold N50 4138
Scaffold L50 (Mbp) 0.00
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.02, 0.01, 0.01

Gene Models ExternalModels
length (bp) of: average median
gene 704 601
transcript 551 469
exon 162 109
intron 65 57
protein length (aa) 184 156
exons per gene 3.41 3
# of gene models 13560

Genome Reference(s)


This project was not sequenced at the JGI.