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Info • Morchella punctipes GB769 v1.0

Status

[March 2020] The Morchella punctipes GB769 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Morchella punctipes GB769 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.99
Sequencing read coverage depth 182.59x
# of contigs 52
# of scaffolds 52
# of scaffolds >= 2Kbp 52
Scaffold N50 12
Scaffold L50 (Mbp) 1.83
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.55, 3.49, 2.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54896 53102 96.7%
Ests est.fasta 94390981 92780591 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1810 1557
transcript 1594 1351
exon 441 281
intron 84 65
description:
protein length (aa) 450 358
exons per gene 3.61 3
# of gene models 10647


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.