Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Morchella tridentina NRRL54570 v1.0

Status

[May 2022] The Morchella tridentina NRRL54570 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 55.75
# of contigs 38
# of scaffolds 38
# of scaffolds >= 2Kbp 38
Scaffold N50 10
Scaffold L50 (Mbp) 2.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.31, 3.83, 3.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51019 49603 97.2%
Ests est.fasta 73440619 72718747 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1838 1575
transcript 1611 1353
exon 439 280
intron 87 65
description:
protein length (aa) 453 355
exons per gene 3.67 3
# of gene models 11075


Collaborators

 

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.