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Info • Mycotypha africana NRRL 2978 v1.0


The Mycotypha africana NRRL 2978 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycotypha africana NRRL 2978 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.20
Sequencing read coverage depth 610.54x
# of contigs 40
# of scaffolds 40
# of scaffolds >= 2Kbp 40
Scaffold N50 6
Scaffold L50 (Mbp) 1.96
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.82, 3.71, 2.46

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 66504 64366 96.8%
Ests est.fasta 121239643 120451339 99.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1657 1399
transcript 1382 1125
exon 359 203
intron 99 82
protein length (aa) 403 314
exons per gene 3.85 3
# of gene models 10917


Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.