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Info • Mycena amicta BAPX v1.0


[December 2017] The Mycena amicta BAPX genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mycena amicta BAPX v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 81.43
Sequencing read coverage depth 42.55x
# of contigs 401
# of scaffolds 401
# of scaffolds >= 2Kbp 396
Scaffold N50 25
Scaffold L50 (Mbp) 0.91
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.16, 3.04, 2.78

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 74428 71211 95.7%
Ests est.fasta 144082978 141518677 98.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1679 1450
transcript 1378 1197
exon 234 146
intron 64 52
protein length (aa) 411 343
exons per gene 5.89 5
# of gene models 25102


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.