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Info • Myceliophthora heterothallica CBS 203.75 v1.0

Status

[May 2015] The Myceliophthora heterothallica CBS 203.75 (mating type A) genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).

Summary statistics for the Myceliophthora heterothallica CBS 203.75 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.36
Sequencing read coverage depth 132.8
# of contigs 547
# of scaffolds 37
# of scaffolds >= 2Kbp 25
Scaffold N50 4
Scaffold L50 (Mbp) 4.40
# of gaps 510
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 5.21, 4.73, 4.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 34560 34047 98.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1820 1560
transcript 1628 1372
exon 590 353
intron 111 79
description:
protein length (aa) 449 359
exons per gene 2.76 2
# of gene models 10061


Collaborators

Don Natvig, University of New Mexico

Amy Powell, Sandia National Laboratories

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.