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Info • Myceliophthora heterothallica CBS 202.75 v1.0

Status

[May 2017] The Myceliophthora heterothallica CBS 202.75 (mating type a) genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Myceliophthora heterothallica CBS 202.75 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.44
Sequencing read coverage depth 85.9x
# of contigs 253
# of scaffolds 87
# of scaffolds >= 2Kbp 70
Scaffold N50 11
Scaffold L50 (Mbp) 1.08
# of gaps 166
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 3.61, 1.74, 1.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 27145430 26539720 97.8%
Other UNM_RNA_contigs 18907 17513 92.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1821 1545
transcript 1619 1362
exon 563 316
intron 110 79
description:
protein length (aa) 479 391
exons per gene 2.88 2
# of gene models 9222


Collaborators

Don Natvig, University of New Mexico

Amy Powell, Sandia National Laboratories

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.