Status
[May 2017] The Myceliophthora heterothallica CBS 202.75 (mating type a) genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Myceliophthora heterothallica
CBS 202.75 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.44 |
| Sequencing read coverage depth | 85.9x |
| # of contigs | 253 |
| # of scaffolds | 87 |
| # of scaffolds >= 2Kbp | 70 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 1.08 |
| # of gaps | 166 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 3.61, 1.74, 1.73 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 27145430 | 26539720 | 97.8% |
| Other | UNM_RNA_contigs | 18907 | 17513 | 92.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1821 | 1545 |
| transcript | 1619 | 1362 |
| exon | 563 | 316 |
| intron | 110 | 79 |
| description: | ||
| protein length (aa) | 479 | 391 |
| exons per gene | 2.88 | 2 |
| # of gene models | 9222 |
Collaborators
Don Natvig, University of New Mexico
Amy Powell, Sandia National Laboratories
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, Kuo A, Mondo S, Riley R, Otillar R, Haridas S, Lipzen A, Grimwood J, Schmutz J, Clum A, Reid ID, Moisan MC, Butler G, Nguyen TTM, Dewar K, Conant G, Drula E, Henrissat B, Hansel C, Singer S, Hutchinson MI, de Vries RP, Natvig DO, Powell AJ, Tsang A, Grigoriev IV
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.
Commun Biol. 2024 Sep 12;7(1):1124. doi: 10.1038/s42003-024-06681-w
Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, Kuo A, Mondo S, Riley R, Otillar R, Haridas S, Lipzen A, Grimwood J, Schmutz J, Clum A, Reid ID, Moisan MC, Butler G, Nguyen TTM, Dewar K, Conant G, Drula E, Henrissat B, Hansel C, Singer S, Hutchinson MI, de Vries RP, Natvig DO, Powell AJ, Tsang A, Grigoriev IV
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.
Commun Biol. 2024 Sep 12;7(1):1124. doi: 10.1038/s42003-024-06681-w
Links
Myceliophthora heterothallica CBS 203.75 (mating type A) homepage on Mycocosm
Sordariomycetes homepage on Mycocosm
Natvig laboratory at University of New Mexico
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
