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Info • Naiadella fluitans ATCC 64713 v1.0

Status

[March 2014] The Naiadella fluitans genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R46652 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Naiadella fluitans ATCC 64713 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.67
Sequencing read coverage depth 82.7x
# of contigs 4363
# of scaffolds 1417
# of scaffolds >= 2Kbp 1055
Scaffold N50 100
Scaffold L50 (Mbp) 0.16
# of gaps 2946
% of scaffold length in gaps 10.8%
Three largest Scaffolds (Mbp) 0.82, 0.61, 0.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests Trinity assembled Illumina ESTs 46132 27203 59.0%


Gene Models FilteredModels2
length (bp) of: average median
gene 1782 1449
transcript 1366 1089
exon 256 148
intron 98 80
description:
protein length (aa) 405 312
exons per gene 5.34 4
# of gene models 13270


Collaborators

Joseph Spatafora, Oregon State University, USA
Mary Catherine Aime, Purdue University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.