Info • Nematocida parisii ERTm1

Status

This genome was sequenced by the Broad Institute. Please check their data use policies.

Summary statistics for the Nematocida parisii ERTm1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 4.07
Sequencing read coverage depth 45.0x
# of contigs 115
# of scaffolds 65
# of scaffolds >= 2Kbp 21
Scaffold N50 3
Scaffold L50 (Mbp) 0.65
# of gaps 50
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 0.95, 0.70, 0.65


Gene Models BroadModels
length (bp) of: average median
gene 1166 924
transcript 1166 924
exon 1165 924
intron 44 31
description:
protein length (aa) 368 283
exons per gene 1.00 1
# of gene models 2661


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Cuomo CA, Desjardins CA, Bakowski MA, Goldberg J, Ma AT, Becnel JJ, Didier ES, Fan L, Heiman DI, Levin JZ, Young S, Zeng Q, Troemel ER
Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.
Genome Res. 2012 Dec;22(12):2478-88. doi: 10.1101/gr.142802.112

Funding

This project was not sequenced at the JGI.