Info • Neocosmospora boninensis NRRL 22470 v1.0

Status

[July 2019] The Neocosmospora boninensis NRRL 22470 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Neocosmospora boninensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.51
Sequencing read coverage depth 139.7x
# of contigs 1044
# of scaffolds 877
# of scaffolds >= 2Kbp 794
Scaffold N50 87
Scaffold L50 (Mbp) 0.18
# of gaps 167
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.24, 1.07, 0.78


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46838 43270 92.4%
Ests est.fasta 167744048 165634648 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1715 1510
transcript 1561 1377
exon 528 332
intron 80 57
description:
protein length (aa) 449 380
exons per gene 2.96 2
# of gene models 17800


Collaborators

Jeffrey Coleman, Auburn University, USA.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.