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Info • Neurospora crassa FGSC 73 trp-3 v1.0

Status

[Jan 2014] The Neurospora crassa FGSC 73 trp-3 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Neurospora crassa FGSC 73 trp-3 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.42
Sequencing read coverage depth 144.8x
# of contigs 757
# of scaffolds 358
# of scaffolds >= 2Kbp 316
Scaffold N50 56
Scaffold L50 (Mbp) 0.24
# of gaps 399
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 1.06, 0.63, 0.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 40757 38650 94.8%


Gene Models FilteredModels3
length (bp) of: average median
gene 2032 1796
transcript 1830 1581
exon 696 411
intron 126 78
description:
protein length (aa) 438 347
exons per gene 2.63 2
# of gene models 11978


Collaborators

Scott E. Baker, Pacific Northwest National Laboratory

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.