Info • Nosema bombycis CQ1

Status

The genome sequence and gene models of Nosema bombycis CQ1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 15.69
Sequencing read coverage depth
# of contigs 3558
# of scaffolds 1607
# of scaffolds >= 2Kbp 1107
Scaffold N50 47
Scaffold L50 (Mbp) 0.06
# of gaps 1951
% of scaffold length in gaps 8.5%
Three largest Scaffolds (Mbp) 0.57, 0.47, 0.47


Gene Models ExternalModels
length (bp) of: average median
gene 762 597
transcript 748 597
exon 718 579
intron 332 231
description:
protein length (aa) 249 199
exons per gene 1.04 1
# of gene models 4468


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Pan G, Xu J, Li T, Xia Q, Liu SL, Zhang G, Li S, Li C, Liu H, Yang L, Liu T, Zhang X, Wu Z, Fan W, Dang X, Xiang H, Tao M, Li Y, Hu J, Li Z, Lin L, Luo J, Geng L, Wang L, Long M, Wan Y, He N, Zhang Z, Lu C, Keeling PJ, Wang J, Xiang Z, Zhou Z
Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation.
BMC Genomics. 2013 Mar 16;14():186. doi: 10.1186/1471-2164-14-186

Links

Funding

This project was not sequenced at the JGI.