Status
The genome and gene models of Ogataea parapolymorpha DL-1 were downloaded from NCBI on Oct 21, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Assembly Method :: Newbler v. 2.0
Sequencing Technology :: 454
Summary statistics for the Ogataea parapolymorpha DL-1
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 8.87 |
| Sequencing read coverage depth | 49.0x |
| # of contigs | 10 |
| # of scaffolds | 7 |
| # of scaffolds >= 2Kbp | 7 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 1.29 |
| # of gaps | 3 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.52, 1.51, 1.33 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1416 | 1203 |
| transcript | 1410 | 1200 |
| exon | 1289 | 1104 |
| intron | 67 | 40 |
| description: | ||
| protein length (aa) | 470 | 400 |
| exons per gene | 1.09 | 1 |
| # of gene models | 5325 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ravin NV, Eldarov MA, Kadnikov VV, Beletsky AV, Schneider J, Mardanova ES, Smekalova EM, Zvereva MI, Dontsova OA, Mardanov AV, Skryabin KG
Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1.
BMC Genomics. 2013 Nov 27;14():837. doi: 10.1186/1471-2164-14-837
Ravin NV, Eldarov MA, Kadnikov VV, Beletsky AV, Schneider J, Mardanova ES, Smekalova EM, Zvereva MI, Dontsova OA, Mardanov AV, Skryabin KG
Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1.
BMC Genomics. 2013 Nov 27;14():837. doi: 10.1186/1471-2164-14-837
Funding
This project was not sequenced at the JGI.
