Info • Ogataea parapolymorpha DL-1


The genome and gene models of Ogataea parapolymorpha DL-1 were downloaded from NCBI on Oct 21, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

Assembly Method :: Newbler v. 2.0
Sequencing Technology :: 454

Summary statistics for the Ogataea parapolymorpha DL-1 release are below.
Genome Assembly
Genome Assembly size (Mbp) 8.87
Sequencing read coverage depth 49.0x
# of contigs 10
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 4
Scaffold L50 (Mbp) 1.29
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.52, 1.51, 1.33

Gene Models ExternalModels
length (bp) of: average median
gene 1416 1203
transcript 1410 1200
exon 1289 1104
intron 67 40
protein length (aa) 470 400
exons per gene 1.09 1
# of gene models 5325

Genome Reference(s)


This project was not sequenced at the JGI.