Info • Oidiodendron maius Zn v1.0

Status

Assembly v1 (May 2011) is a draft assembly of 454 gDNA reads and shredded Velvet contigs. The latter were assembled from Solexa gDNA reads. A total of 100 scaffolds and 46.4 Mbp were assembled using Newbler.

Summary statistics for the Oidiodendron maius v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 46.43
Sequencing read coverage depth 28.70x
# of contigs 387
# of scaffolds 100
# of scaffolds >= 2Kbp 100
Scaffold N50 8
Scaffold L50 (Mbp) 1.95
# of gaps 287
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 6.61, 3.15, 3.00


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests 454_ESTs 559321 333121 59.6%
Ests Sanger_ESTs 218 206 94.5%
Other Mira_contigs 28007 25169 89.9%
Other Newbler_contigs 12616 12402 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1578 1342
transcript 1401 1187
exon 472 291
intron 91 58
description:
protein length (aa) 429 358
exons per gene 2.97 3
# of gene models 16703


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.