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Info • Olpidium bornovanus UBC F19785

Status

[February 2020] The genome of Olpidium bornovanus UBC F19785 was extracted from a metagenome, sequenced at the DOE Joint Genome Institute, binned by Ying Chang at Oregon State University, then assembled and annotated by Jason Stajich at University of California at Riverside, then imported into MycoCosm. Please note that this version is not maintained by Ying Chang or Jason Stajich and therefore not automatically updated.

Summary statistics for the Olpidium bornovanus UBC F19785 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.25
Sequencing read coverage depth
# of contigs 13525
# of scaffolds 13525
# of scaffolds >= 2Kbp 5567
Scaffold N50 4329
Scaffold L50 (Mbp) 0.00
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.01, 0.01, 0.01


Gene Models ExternalModels
length (bp) of: average median
gene 1176 1015
transcript 902 768
exon 323 234
intron 155 108
description:
protein length (aa) 282 240
exons per gene 2.79 2
# of gene models 8477


Collaborators

Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.