Status
This genome was not sequenced by JGI. Summary statistics for the
Orpinomyces sp C1A v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 100.95 |
| Sequencing read coverage depth | 300x |
| # of contigs | 32574 |
| # of scaffolds | 32574 |
| # of scaffolds >= 2Kbp | 23838 |
| Scaffold N50 | 10167 |
| Scaffold L50 (Mbp) | 0.00 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.02, 0.02, 0.02 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1470 | 1153 |
| transcript | 1148 | 872 |
| exon | 386 | 176 |
| intron | 165 | 137 |
| description: | ||
| protein length (aa) | 382 | 290 |
| exons per gene | 2.98 | 2 |
| # of gene models | 18936 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA, Najar FZ, Atiyeh HK, Wilkins MR, Elshahed MS
The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader.
Appl Environ Microbiol. 2013 Aug;79(15):4620-34. doi: 10.1128/AEM.00821-13
Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA, Najar FZ, Atiyeh HK, Wilkins MR, Elshahed MS
The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader.
Appl Environ Microbiol. 2013 Aug;79(15):4620-34. doi: 10.1128/AEM.00821-13
Funding
This project was not sequenced at the JGI.
