Info • Oudemansiella mucida CBS 558.79 v1.0


(May 2016) The Oudemansiella mucida CBS 558.79 genome was sequenced using PacBio, assembled with Falcon, polished with Quiver, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.

The JGI annotation pipeline identified 5,501 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Oudemansiella mucida v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.73
Sequencing read coverage depth 131x
# of contigs 1386
# of scaffolds 1386
# of scaffolds >= 2Kbp 1338
Scaffold N50 107
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.15, 1.35, 0.84

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 78574 73656 93.7%
Ests est.fasta 206157592 191549463 92.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1573 1349
transcript 1299 1113
exon 229 145
intron 61 53
protein length (aa) 378 315
exons per gene 5.67 4
# of gene models 18562


José María Barrasa, Universidad de Alcalá, Spain

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.