Info • Paracoccidioides lutzii Pb01

Status

The genome sequence and gene models of Paracoccidioides lutzii Pb01 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 32.93
Sequencing read coverage depth
# of contigs 519
# of scaffolds 110
# of scaffolds >= 2Kbp 110
Scaffold N50 12
Scaffold L50 (Mbp) 1.03
# of gaps 409
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 2.22, 2.17, 1.62


Gene Models ExternalModels
length (bp) of: average median
gene 1581 1312
transcript 1347 1083
exon 442 222
intron 116 83
description:
protein length (aa) 449 361
exons per gene 3.05 3
# of gene models 8826


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, Rodríguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.
PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345

Funding

This project was not sequenced at the JGI.