Status
The genome sequence and gene models of Paracoccidioides lutzii Pb01 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Genome Assembly | |
Genome Assembly size (Mbp) | 32.93 |
Sequencing read coverage depth | |
# of contigs | 519 |
# of scaffolds | 110 |
# of scaffolds >= 2Kbp | 110 |
Scaffold N50 | 12 |
Scaffold L50 (Mbp) | 1.03 |
# of gaps | 409 |
% of scaffold length in gaps | 0.9% |
Three largest Scaffolds (Mbp) | 2.22, 2.17, 1.62 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1581 | 1312 |
transcript | 1347 | 1083 |
exon | 442 | 222 |
intron | 116 | 83 |
description: | ||
protein length (aa) | 449 | 361 |
exons per gene | 3.05 | 3 |
# of gene models | 8826 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, RodrÃguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.
PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345
Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, RodrÃguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.
PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Onygenales
Funding
This project was not sequenced at the JGI.