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Info • Paraconiothyrium sporulosum AP3s5-JAC2a v1.0

Status

[Dec 2014] The Paraconiothyrium sporulosum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Paraconiothyrium sporulosum AP3s5-JAC2a v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.46
Sequencing read coverage depth 118.9x
# of contigs 339
# of scaffolds 61
# of scaffolds >= 2Kbp 38
Scaffold N50 5
Scaffold L50 (Mbp) 3.13
# of gaps 278
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 5.40, 5.13, 3.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 30057 29776 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1654 1436
transcript 1519 1311
exon 565 365
intron 82 56
description:
protein length (aa) 434 358
exons per gene 2.69 2
# of gene models 14745


Collaborators

Colleen Hansel at the Woods Hole Oceanographic Institution.
Cara M. Santelli at the Smithsonian Institution, Washington, DC.

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.