Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Talaromyces aculeatus ATCC 10409 v1.0

Status

Feb 2014. The Talaromyces aculeatus genome was sequenced using the Illumina platform and assembled with AllPathsLG version R46652, (Gnerre et al., 2010).

Summary statistics for the Talaromyces aculeatus ATCC 10409 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.27
Sequencing read coverage depth 91.8
# of contigs 165
# of scaffolds 49
# of scaffolds >= 2Kbp 44
Scaffold N50 5
Scaffold L50 (Mbp) 2.93
# of gaps 116
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 6.46, 4.92, 3.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 29784 29472 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1772 1555
transcript 1608 1415
exon 509 306
intron 78 60
description:
protein length (aa) 472 402
exons per gene 3.16 3
# of gene models 13793


Collaborators

Dave Greenshields, Novozymes

Keith Seifert, Agriculture and Agri-Food Canada

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.