Info • Penicillium chrysogenum Wisconsin 54-1255

Status

The genome sequence and gene prediction of Penicillium crysogenum were not determined by the JGI, but were downloaded from NCBI genome and have been published (pubmed: 18820685). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Penicillium chrysogenum Wisconsin 54-1255 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.22
Sequencing read coverage depth 9.8x
# of contigs 242
# of scaffolds 49
# of scaffolds >= 2Kbp 22
Scaffold N50 4
Scaffold L50 (Mbp) 3.89
# of gaps 193
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 6.39, 5.62, 3.99


Gene Models ExternalModels
length (bp) of: average median
gene 1514 1278
transcript 1333 1092
exon 434 218
intron 89 63
description:
protein length (aa) 444 364
exons per gene 3.07 3
# of gene models 13671


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ, Garcia-Estrada C, Fedorova ND, Harris DM, Heijne WH, Joardar V, Kiel JA, Kovalchuk A, Martín JF, Nierman WC, Nijland JG, Pronk JT, Roubos JA, van der Klei IJ, van Peij NN, Veenhuis M, von Döhren H, Wagner C, Wortman J, Bovenberg RA
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum.
Nat Biotechnol. 2008 Oct;26(10):1161-8. doi: 10.1038/nbt.1498

Funding

This project was not sequenced at the JGI.