Status
The genome sequence and gene models of Penicillium nordicum DAOMC 185683 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 2, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Penicillium nordicum DAOMC
185683 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.84 |
| Sequencing read coverage depth | |
| # of contigs | 1007 |
| # of scaffolds | 996 |
| # of scaffolds >= 2Kbp | 708 |
| Scaffold N50 | 105 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 11 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.39, 0.34, 0.28 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1388 | 1167 |
| transcript | 1237 | 1020 |
| exon | 437 | 218 |
| intron | 85 | 63 |
| description: | ||
| protein length (aa) | 412 | 340 |
| exons per gene | 2.83 | 2 |
| # of gene models | 12959 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wingfield BD, Barnes I, Wilhelm de Beer Z, De Vos L, Duong TA, Kanzi AM, Naidoo K, Nguyen HD, Santana QC, Sayari M, Seifert KA, Steenkamp ET, Trollip C, van der Merwe NA, van der Nest MA, Markus Wilken P, Wingfield MJ
IMA Genome-F 5: Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum,Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum.
IMA Fungus. 2015 Dec;6(2):493-506. doi: 10.5598/imafungus.2015.06.02.13
Wingfield BD, Barnes I, Wilhelm de Beer Z, De Vos L, Duong TA, Kanzi AM, Naidoo K, Nguyen HD, Santana QC, Sayari M, Seifert KA, Steenkamp ET, Trollip C, van der Merwe NA, van der Nest MA, Markus Wilken P, Wingfield MJ
IMA Genome-F 5: Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum,Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum.
IMA Fungus. 2015 Dec;6(2):493-506. doi: 10.5598/imafungus.2015.06.02.13
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Penicillium
Funding
This project was not sequenced at the JGI.
