Status
Penicillium subrubescens FBCC1632 / CBS132785 was sequenced by CBS-KNAW Fungal Biodiversity Centre and University of Helsinki using Illumina HiSeq2500, and annotated with software Glimmer v3.02 and EvidenceModeler v1.1.1 which integrated mRNA-Seq evidence to improve gene prediction. JGI tools were used to add functional annotations to the gene models.
Summary statistics for the Penicillium subrubescens
FBCC1632 / CBS132785 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.80 |
| Sequencing read coverage depth | |
| # of contigs | 1146 |
| # of scaffolds | 776 |
| # of scaffolds >= 2Kbp | 624 |
| Scaffold N50 | 36 |
| Scaffold L50 (Mbp) | 0.32 |
| # of gaps | 370 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.98, 0.97, 0.86 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1426 | 1191 |
| transcript | 1249 | 1032 |
| exon | 507 | 289 |
| intron | 123 | 69 |
| description: | ||
| protein length (aa) | 416 | 344 |
| exons per gene | 2.46 | 2 |
| # of gene models | 14188 |
Collaborators
Ronald P. de Vries, CBS-KNAW Fungal Biodiversity Centre
Kristiina Hildén, University of Helsinki
Miia Mäkelä, University of Helsinki
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Peng M, Dilokpimol A, Mäkelä MR, Hildén K, Bervoets S, Riley R, Grigoriev IV, Hainaut M, Henrissat B, de Vries RP, Granchi Z
The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi.
J Biotechnol. 2017 Mar 20;246():1-3. doi: 10.1016/j.jbiotec.2017.02.012
Peng M, Dilokpimol A, Mäkelä MR, Hildén K, Bervoets S, Riley R, Grigoriev IV, Hainaut M, Henrissat B, de Vries RP, Granchi Z
The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi.
J Biotechnol. 2017 Mar 20;246():1-3. doi: 10.1016/j.jbiotec.2017.02.012
Funding
This project was not sequenced at the JGI.
