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Info • Penicillium subrubescens FBCC1632 / CBS132785

Status

Penicillium subrubescens FBCC1632 / CBS132785 was sequenced by CBS-KNAW Fungal Biodiversity Centre and University of Helsinki using Illumina HiSeq2500, and annotated with software Glimmer v3.02 and EvidenceModeler v1.1.1 which integrated mRNA-Seq evidence to improve gene prediction. JGI tools were used to add functional annotations to the gene models.

Summary statistics for the Penicillium subrubescens FBCC1632 / CBS132785 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.80
Sequencing read coverage depth
# of contigs 1146
# of scaffolds 776
# of scaffolds >= 2Kbp 624
Scaffold N50 36
Scaffold L50 (Mbp) 0.32
# of gaps 370
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.98, 0.97, 0.86


Gene Models ExternalModels
length (bp) of: average median
gene 1426 1191
transcript 1249 1032
exon 507 289
intron 123 69
description:
protein length (aa) 416 344
exons per gene 2.46 2
# of gene models 14188


Collaborators

Ronald P. de Vries, CBS-KNAW Fungal Biodiversity Centre

Kristiina Hildén, University of Helsinki

Miia Mäkelä, University of Helsinki

Genome Reference(s)

Funding

This project was not sequenced at the JGI.