Status
(Jan 2016) The genome of Penicillium thymicola was sequenced not by the JGI, but by colleagues at the University of Ottawa. The sequence was generated with Illumina technology, assembled with SPAdes, and annotated with the JGI annotation pipeline.
Summary statistics for the Penicillium_thymicola v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.88 |
| Sequencing read coverage depth | 0x |
| # of contigs | 2180 |
| # of scaffolds | 2167 |
| # of scaffolds >= 2Kbp | 1541 |
| Scaffold N50 | 215 |
| Scaffold L50 (Mbp) | 0.05 |
| # of gaps | 13 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.21, 0.21, 0.20 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | Trinity_RNA_contigs | 30779 | 29780 | 96.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1582 | 1343 |
| transcript | 1403 | 1172 |
| exon | 462 | 258 |
| intron | 90 | 62 |
| description: | ||
| protein length (aa) | 442 | 364 |
| exons per gene | 3.04 | 3 |
| # of gene models | 12467 |
Collaborators
Hai Nguyen, University of Ottawa, Department of Biology and Agriculture and Agri-Food Canada
Keith Seifert, Agriculture and Agri-Food Canada
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nguyen HDT, McMullin DR, Ponomareva E, Riley R, Pomraning KR, Baker SE, Seifert KA
Ochratoxin A production by Penicillium thymicola.
Fungal Biol. 2016 Aug;120(8):1041-1049. doi: 10.1016/j.funbio.2016.04.002
Nguyen HDT, McMullin DR, Ponomareva E, Riley R, Pomraning KR, Baker SE, Seifert KA
Ochratoxin A production by Penicillium thymicola.
Fungal Biol. 2016 Aug;120(8):1041-1049. doi: 10.1016/j.funbio.2016.04.002
Funding
This project was not sequenced at the JGI.
