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Info • Phascolomyces articulosus v1.0

Status

[September 2016] The Phascolomyces articulosus RSA 2281 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phascolomyces articulosus RSA 2281 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.61
Sequencing read coverage depth 121.3x
# of contigs 150
# of scaffolds 150
# of scaffolds >= 2Kbp 144
Scaffold N50 15
Scaffold L50 (Mbp) 1.07
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.71, 2.14, 1.87


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46310 44659 96.4%
Ests est.fasta 159383736 158037383 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1828 1566
transcript 1384 1159
exon 295 173
intron 122 101
description:
protein length (aa) 400 323
exons per gene 4.69 4
# of gene models 14495


Collaborators

 

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.