Info • Phialemonium atrogriseum 8032-3 v1.0

Status

[March 2022] This genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 33.59
Sequencing read coverage depth 283.81x
# of contigs 95
# of scaffolds 82
# of scaffolds >= 2Kbp 79
Scaffold N50 12
Scaffold L50 (Mbp) 0.92
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.66, 2.38, 1.56


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42820 42330 98.9%
Ests est.fasta 82807753 82352277 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1965 1705
transcript 1764 1518
exon 564 341
intron 97 70
description:
protein length (aa) 496 409
exons per gene 3.13 3
# of gene models 11400


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.