Info • Phialocephala scopiformis 5WS22E1 v1.0


[Feb 2015] The Phialocephala scopiformis 5WS22E1 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phialocephala scopiformis 5WS22E1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.88
Sequencing read coverage depth 80.5x
# of contigs 302
# of scaffolds 71
# of scaffolds >= 2Kbp 64
Scaffold N50 15
Scaffold L50 (Mbp) 1.33
# of gaps 231
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 2.76, 1.96, 1.91

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 37002 36721 99.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1649 1429
transcript 1491 1287
exon 485 310
intron 78 55
protein length (aa) 428 356
exons per gene 3.07 3
# of gene models 18573


Dr. Allison Walker, Acacia University, Canada

Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.