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Info • Phyllosticta paracitricarpa CBS 141357 v1.0

Status

[May 2017] The Phyllosticta paracitricarpa CBS 141357 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta paracitricarpa CBS 141357 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.53
Sequencing read coverage depth 128.16x
# of contigs 134
# of scaffolds 134
# of scaffolds >= 2Kbp 133
Scaffold N50 23
Scaffold L50 (Mbp) 0.51
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.02, 0.92, 0.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38984 36544 93.7%
Ests est.fasta 125272825 122195162 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1621 1353
transcript 1481 1209
exon 557 350
intron 87 58
description:
protein length (aa) 426 337
exons per gene 2.66 2
# of gene models 11081


Collaborators

Pedro Crous, CBS-KNAW, The Netherlands.

Joseph Spatafora, Oregon State University, USA

Francis M. Martin, INRA, France.

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.