Info • Picoa lefebvrei Pl1701 v1.0


[April 2023] The Picoa lefebvrei Pl1701 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 166.31
Sequencing read coverage depth 28.03x
# of contigs 1097
# of scaffolds 1097
# of scaffolds >= 2Kbp 1092
Scaffold N50 162
Scaffold L50 (Mbp) 0.30
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.28, 1.28, 1.25

Please note RNA data suffers from contamination. Unmapped RNA contigs have BLAST hits to cloning vectors, Mus musculus and bacteria.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 73697 38777 52.6%
Ests est.fasta 142206003 90447186 63.6%

Gene Models FilteredModels1
length (bp) of: average median
gene 1597 1297
transcript 1383 1095
exon 431 261
intron 99 63
protein length (aa) 403 301
exons per gene 3.21 3
# of gene models 16310



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.