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Info • Piromyces finnis v3.0

Status

Assembly v3.0 (June 2015) is an improved draft assembly, using PacBio gDNAs assembled with Falcon, patched with FinisherSC, and polished with Quiver.

Summary statistics for the Piromyces sp. finn v3.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.46
Sequencing read coverage depth ??
# of contigs 232
# of scaffolds 232
# of scaffolds >= 2Kbp 232
Scaffold N50 25
Scaffold L50 (Mbp) 0.75
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.63, 1.96, 1.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 17008 15543 91.4%


Gene Models FilteredModels5
length (bp) of: average median
gene 2344 1909
transcript 1754 1357
exon 354 158
intron 151 116
description:
protein length (aa) 520 385
exons per gene 4.95 3
# of gene models 10992


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.