Info • Plectosphaerella cucumerina DS2psM2a2 v1.0


[May 2015] The Plectosphaerella cucumerina genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Plectosphaerella cucumerina DS2psM2a2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.84
Sequencing read coverage depth 86.9x
# of contigs 124
# of scaffolds 26
# of scaffolds >= 2Kbp 24
Scaffold N50 4
Scaffold L50 (Mbp) 4.03
# of gaps 98
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 8.96, 5.09, 4.23

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 26239 26051 99.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1664 1438
transcript 1543 1323
exon 600 383
intron 79 58
protein length (aa) 439 365
exons per gene 2.57 2
# of gene models 14254


Colleen Hansel at the Woods Hole Oceanographic Institution.
Cara M. Santelli at the Smithsonian Institution, Washington, DC.


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.