Info • Pleomassaria siparia v1.0


[June 2013] The Pleomassaria siparia genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R44849 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately with AllPathsLG to produce an assembly with 8 scaffolds, 95 Kb scaffold N50, 184714 bp total scaffold and is available in the downloads section.

Summary statistics for the Pleomassaria siparia CBS 279.74 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.18
Sequencing read coverage depth 87.3x
# of contigs 1023
# of scaffolds 193
# of scaffolds >= 2Kbp 132
Scaffold N50 8
Scaffold L50 (Mbp) 1.89
# of gaps 830
% of scaffold length in gaps 1.3%
Three largest Scaffolds (Mbp) 4.56, 4.46, 2.74

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 30225 29325 97.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1666 1418
transcript 1474 1251
exon 524 319
intron 108 60
protein length (aa) 426 349
exons per gene 2.81 2
# of gene models 13486


Joseph Spatafora, Oregon State University, USA.

Pedro Crous and Manfred Binder at CBS-KNAW, Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.