Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Pluteus cervinus NL-1719 v1.0

Status

(Dec 2015) The Pluteus cervinus NL-1719 genome was sequenced using Illumina and assembled with Velvet and AllPathsLG.

Summary statistics for the Pluteus cervinus NL-1719 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.19
Sequencing read coverage depth 138.2x
# of contigs 3329
# of scaffolds 1887
# of scaffolds >= 2Kbp 1392
Scaffold N50 119
Scaffold L50 (Mbp) 0.10
# of gaps 1442
% of scaffold length in gaps 4.5%
Three largest Scaffolds (Mbp) 2.18, 0.96, 0.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54086 50788 93.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1658 1408
transcript 1370 1149
exon 258 152
intron 69 56
description:
protein length (aa) 402 325
exons per gene 5.32 4
# of gene models 19818


Collaborators

Joseph W. Spatafora, Oregon State University

László Nagy, Hungarian Academy of Sciences

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.