Info • Phycomyces nitens S607 v1.0


[May 2017] The Phycomyces nitens S607 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phycomyces nitens S607 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.56
Sequencing read coverage depth 171.82x
# of contigs 226
# of scaffolds 226
# of scaffolds >= 2Kbp 217
Scaffold N50 35
Scaffold L50 (Mbp) 0.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.07, 0.95, 0.93

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 71972 65388 90.9%
Ests est.fasta 183114952 175981086 96.1%

Gene Models FilteredModels1
length (bp) of: average median
gene 1683 1436
transcript 1400 1185
exon 294 173
intron 77 64
protein length (aa) 398 321
exons per gene 4.76 4
# of gene models 11669


Dr. Alexander Idnurm, University of Melbourne, Australia

Dr. Luis Corrochano, University of Seville, Spain


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.