Info • Phycomyces nitens S608 v1.0


[May 2017] The Phycomyces nitens S608 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phycomyces nitens S608 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.68
Sequencing read coverage depth 141.99x
# of contigs 184
# of scaffolds 184
# of scaffolds >= 2Kbp 178
Scaffold N50 22
Scaffold L50 (Mbp) 0.58
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.49, 1.38, 1.32

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 79270 59710 75.3%
Ests est.fasta 164720869 161851925 98.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1685 1433
transcript 1400 1180
exon 295 174
intron 78 64
protein length (aa) 399 321
exons per gene 4.74 4
# of gene models 11985


Dr. Alexander Idnurm, University of Melbourne, Australia

Dr. Luis Corrochano, University of Seville, Spain


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.