Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Podospora anserina mat+ v1.0

Status

[December 2017] The Podospora anserina mat+ genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Podospora anserina mat+ v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.54
Sequencing read coverage depth 104.5x
# of contigs 11
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 4.89
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.88, 5.27, 4.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30374 30022 98.8%
Ests est.fasta 99587656 99362645 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1812 1560
transcript 1687 1437
exon 690 445
intron 89 64
description:
protein length (aa) 476 388
exons per gene 2.44 2
# of gene models 11692


Collaborators

Ronald de Vries at the Westerdijk Fungal Biodiversity Institute , Utrecht, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.