Info • Podospora australis PSN309 v1.0

Status

[March 2022] The Podospora australis PSN309 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 37.78
Sequencing read coverage depth 177.86x
# of contigs 607
# of scaffolds 578
# of scaffolds >= 2Kbp 488
Scaffold N50 41
Scaffold L50 (Mbp) 0.23
# of gaps 29
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.47, 1.31, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41686 40269 96.6%
Ests est.fasta 92277779 91320109 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1914 1645
transcript 1732 1480
exon 649 411
intron 111 70
description:
protein length (aa) 487 395
exons per gene 2.67 2
# of gene models 12016


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.